Genetic epidemiology · Causal inference · AI

Ali Reza
Soleymani Taloubaghi

I use human genetics as nature's randomized trial. My work combines Mendelian randomization, evidence synthesis and machine learning to find out which risk factors truly cause disease, and I build software that makes these methods rigorous and reproducible.

About

From structures to causes

I trained first as a civil engineer, optimising earthquake-resistant structures with soft computing, and then earned an M.Sc. in Artificial Intelligence in Taiwan with a perfect GPA and the top rank in my cohort. Prediction alone left me with a question it could not answer: what would happen if we intervened? Since 2023 I have answered that question with genetic data, through Mendelian randomization studies of nutritional, metabolic and reproductive health. In that work I combine statistical genetics with software engineering, and I now want to bring both to East Asian biobank data.

Causal genetics

Two-sample, multivariable and drug-target MR; robust estimators for pleiotropy; colocalisation; genetic correlation.

Machine learning

Graph neural networks, attention and reinforcement learning (M.Sc. thesis); interpretable ML and double ML for health data.

Research software

Validated, tested tools such as MR Studio and BioCalX that put rigorous methods in clinicians' hands.

Research & software

Selected work

Results of unpublished studies are withheld until peer-reviewed publication. Click any card for design and methods.

Publications

Peer-reviewed articles

Indexed in PubMed. My name is shown in bold.

Education

Degrees

2023 – present

Ph.D. program, Engineering Science & Technology

National Yunlin University of Science and Technology, Taiwan

Data Science & AI Applications. Admitted on faculty recommendation as a dual-degree student.

2023 – 2025

M.Sc. Artificial Intelligence

International Graduate School of AI, YunTech, Taiwan · English-medium

GPA 4.00/4.00 · average 96.46 · ranked 1st of 15. Thesis: Improving autonomous-vehicle trajectory prediction with an enhanced DenseTNT (advisor: Assoc. Prof. Kuei-Chung Chang).

2016

M.Sc. Civil Engineering (Earthquake Engineering)

Urmia University, Iran

Thesis: optimal seismic design of steel structures with soil–structure interaction using soft computing.

2012

B.Sc. Civil Engineering

Urmia University, Iran
Experience

Research & teaching

2023 – present

Research collaborator, genetic epidemiology

With Dr. Danial Habibi (Babol Univ. of Medical Sciences) & Dr. Mahdi Akbarzadeh (Shahid Beheshti Univ. of Medical Sciences)

Lead analyst and developer on MR pipelines; Persian translation of Burgess & Thompson, Mendelian Randomization (2nd ed.), with the author's permission.

2023 – 2024

Research assistant

International Graduate School of AI, YunTech

Trajectory prediction, knowledge distillation, multi-modal gesture recognition.

2024

Teaching assistant: UAVs & Autonomous Vehicles

YunTech
2013 – 2017

Lecturer & teaching assistant, civil engineering

Sariyan Institute; Urmia University; University College of Science & Technology
2008 – 2022

English instructor (incl. GRE/GMAT preparation)

Negin Khavar Mianeh Institute, Iran
Recognition

Honors & awards

ΦΤΦ

Phi Tau Phi Scholastic Honor Society (2024)

The only international student inducted at YunTech that year.

#1

Top of cohort: M.Sc. Artificial Intelligence

Ranked 1st of 15 with a 4.00/4.00 GPA, YunTech.

JP

Inbound research program: Hosei University, Tokyo (2024)

Selected first-rank for a summer research-lab program.

MY

Inbound research program: UPSI, Malaysia (2023)

Selected first-rank for a summer research-lab program.

Toolkit

Skills

Causal inference & genetics

IVW / Egger / median / modeMR-PRESSORadial MRMVMRDrug-target MRCAUSEMRlapMR-ClustLDSCColocalisationSteiger

Statistics & evidence synthesis

Meta-analysisPRISMAmetaforMICEPenalised regressionDouble MLCausal forestsPower analysis

Machine learning

PyTorchTensorFlowscikit-learnXGBoostGNN / GATRLSHAPLLM / RAG

Genomic data

UK BiobankFinnGenGWAS CatalogIEU OpenGWASGLGC1000 GenomesPLINKTwoSampleMR

Programming

Radvanced
Pythonadvanced
Kotlin · Swift · JS · Rustapplied

Languages

Persiannative
Englishfull professional
Mandarin Chineseupper-beginner
Contact

Let's talk science

I welcome conversations about Mendelian randomization, statistical genetics and causal machine learning, especially with groups working on East Asian biobank data.